I bussed the click into a track, then recorded that click track so I had a reference. Then, I took my headphone out from the 6i6 and ran it through the Kemper. Logic had Low Latency mode on set to 0 MS (Not sure how serious that is)
I then turned all of the Kemper's stacks off and let it process through in and out and recorded into a new track.
To my pleasant surprise, the clicks lined up perfectly with the original. Although, I was hoping they would cancel each other out and they did not. I am assuming this was most likely caused by the colouration of the headphone out.
I just thought everyone would like to know.
Tom